Issues with my galaxy server

Thu May 29 16:00:39 UTC 2014

I have checked the error.log and the following is what I am seeing:

2014/05/28 15:18:39 [info] 16146#0: *987 client closed prematurely
connection, so upstream connection is closed too while sending request to
upstream, client: 10.40.42.12, server: localhost, request: "GET
/library_common/browse_library?sort=name&operation=browse&f-description=All
&f-name=All&f-deleted=False&cntrller=library_admin&async=false&show_item_ch
eckboxes=false&webapp=galaxy&id=ddd269e1ed2f8b5e&page=1 HTTP/1.1",
upstream: 
"http://127.0.0.1:8081/library_common/browse_library?sort=name&operation=br
owse&f-description=All&f-name=All&f-deleted=False&cntrller=library_admin&as
ync=false&show_item_checkboxes=false&webapp=galaxy&id=ddd269e1ed2f8b5e&page
=1", host: "galaxy.jax.org", referrer:
"http://galaxy.jax.org/library_admin/browse_libraries"
2014/05/28 15:18:45 [info] 16146#0: *1019 client closed prematurely
connection while reading client request line, client: 10.40.42.12, server:
localhost
2014/05/28 15:27:03 [error] 16146#0: *1016 upstream timed out (110:
Connection timed out) while reading response header from upstream, client:
10.40.42.12, server: localhost, request: "GET
/library_common/browse_library?sort=name&operation=browse&f-description=All
&f-name=All&f-deleted=False&cntrller=library_admin&async=false&show_item_ch
eckboxes=false&webapp=galaxy&id=ddd269e1ed2f8b5e&page=1 HTTP/1.1",
upstream: 
"http://127.0.0.1:8080/library_common/browse_library?sort=name&operation=br
owse&f-description=All&f-name=All&f-deleted=False&cntrller=library_admin&as
ync=false&show_item_checkboxes=false&webapp=galaxy&id=ddd269e1ed2f8b5e&page
=1", host: "galaxy.jax.org", referrer:
"http://galaxy.jax.org/library_admin/browse_libraries"
2014/05/28 16:11:52 [error] 16146#0: *1604 upstream timed out (110:
Connection timed out) while reading response header from upstream, client:
10.20.23.189, server: localhost, request: "GET
/library_common/browse_library?sort=name&operation=browse&f-description=All
&f-name=All&f-deleted=False&cntrller=library_admin&async=false&show_item_ch
eckboxes=false&webapp=galaxy&id=ddd269e1ed2f8b5e&page=1 HTTP/1.1",
upstream: 
"http://127.0.0.1:8081/library_common/browse_library?sort=name&operation=br
owse&f-description=All&f-name=All&f-deleted=False&cntrller=library_admin&as
ync=false&show_item_checkboxes=false&webapp=galaxy&id=ddd269e1ed2f8b5e&page
=1", host: "galaxy", referrer:
"http://galaxy/library_admin/browse_libraries"
2014/05/28 16:12:12 [info] 16146#0: *1604 client 10.20.23.189 closed
keepalive connection
2014/05/28 16:18:20 [info] 16146#0: *1791 client closed prematurely
connection, so upstream connection is closed too while sending request to
upstream, client: 10.1.101.207, server: localhost, request: "GET
/library_common/browse_library?sort=name&webapp=galaxy&f-description=All&f-
name=All&page=1&cntrller=library&show_item_checkboxes=false&async=false&ope
ration=browse&id=e49526e74f52ec39 HTTP/1.1", upstream:
"http://127.0.0.1:8081/library_common/browse_library?sort=name&webapp=galax
y&f-description=All&f-name=All&page=1&cntrller=library&show_item_checkboxes
=false&async=false&operation=browse&id=e49526e74f52ec39", host:
"galaxy.jax.org", referrer:
"http://galaxy.jax.org/library/browse_libraries"
2014/05/28 16:22:52 [info] 16146#0: *1869 client 10.1.101.207 closed
keepalive connection
2014/05/28 16:23:52 [info] 16146#0: *1888 client 10.1.101.207 closed
keepalive connection
2014/05/28 16:24:16 [info] 16146#0: *1901 client 10.1.101.207 closed
keepalive connection
2014/05/28 16:26:37 [info] 16146#0: *1950 client closed prematurely
connection while reading client request line, client: 10.1.101.207,
server: localhost
2014/05/28 16:32:39 [info] 16146#0: *2047 client 209.222.197.239 closed
keepalive connection
2014/05/28 22:29:20 [info] 16146#0: *2082 client closed prematurely
connection while reading client request line, client: 192.168.253.157,
server: localhost
2014/05/28 22:29:20 [info] 16146#0: *2081 client closed prematurely
connection while reading client request line, client: 192.168.253.157,
server: localhost
2014/05/28 22:29:21 [info] 16146#0: *2083 client closed prematurely
connection while reading client request line, client: 192.168.253.157,
server: localhost
2014/05/28 22:29:21 [info] 16146#0: *2084 client closed prematurely
connection while reading client request line, client: 192.168.253.157,
server: localhost
2014/05/28 22:29:21 [info] 16146#0: *2085 client closed prematurely
connection while reading client request line, client: 192.168.253.157,
server: localhost
2014/05/29 08:53:40 [info] 16146#0: *2087 client closed prematurely
connection while reading client request line, client: 10.20.23.189,
server: localhost
2014/05/29 08:53:40 [info] 16146#0: *2088 client closed prematurely
connection while reading client request line, client: 10.20.23.189,
server: localhost
2014/05/29 08:53:40 [info] 16146#0: *2089 client closed prematurely
connection while reading client request line, client: 10.20.23.189,
server: localhost
2014/05/29 08:53:40 [info] 16146#0: *2090 client closed prematurely
connection while reading client request line, client: 10.20.23.189,
server: localhost
2014/05/29 08:53:40 [info] 16146#0: *2091 client closed prematurely
connection while reading client request line, client: 10.20.23.189,
server: localhost
2014/05/29 09:04:22 [error] 16146#0: *2099 upstream timed out (110:
Connection timed out) while reading response header from upstream, client:
10.20.23.189, server: localhost, request: "GET
/library_common/browse_library?sort=name&operation=browse&f-description=All
&f-name=All&f-deleted=False&cntrller=library_admin&async=false&show_item_ch
eckboxes=false&webapp=galaxy&id=ddd269e1ed2f8b5e&page=1 HTTP/1.1",
upstream: 
"http://127.0.0.1:8082/library_common/browse_library?sort=name&operation=br
owse&f-description=All&f-name=All&f-deleted=False&cntrller=library_admin&as
ync=false&show_item_checkboxes=false&webapp=galaxy&id=ddd269e1ed2f8b5e&page
=1", host: "galaxy.jax.org", referrer:
"http://galaxy.jax.org/library_admin/browse_libraries"
2014/05/29 09:20:30 [error] 16146#0: *2110 upstream timed out (110:
Connection timed out) while reading response header from upstream, client:
10.20.23.189, server: localhost, request: "GET
/library_common/browse_library?sort=name&operation=browse&f-description=All
&f-name=All&f-deleted=False&cntrller=library_admin&async=false&show_item_ch
eckboxes=false&webapp=galaxy&id=ddd269e1ed2f8b5e&page=1 HTTP/1.1",
upstream: 
"http://127.0.0.1:8082/library_common/browse_library?sort=name&operation=br
owse&f-description=All&f-name=All&f-deleted=False&cntrller=library_admin&as
ync=false&show_item_checkboxes=false&webapp=galaxy&id=ddd269e1ed2f8b5e&page
=1", host: "galaxy", referrer:
"http://galaxy/library_admin/browse_libraries"

I am currently running the following version of Nginx:

nginx version: nginx/0.8.53
built by gcc 4.3.4 [gcc-4_3-branch revision 152973] (SUSE Linux)
configure arguments: --prefix=/usr/local/nginx-0.8.53
--add-module=/usr/local/src/nginx_upload_module-2.2.0

I am planning an upgrade in the near future, but really need to get this
issue resolved.

Thanks,
Iry

On 5/29/14 11:36 AM, "Reinis Rozitis" <r at roze.lv> wrote:

>> "The page you are looking for is temporarily unavailable.  Please try
>> again later."
>>  Can you provide me with insight?
>
>The first thing would be to check what the actual HTTP error is (is it
>some 
>5xx or 4xx etc) - some browsers (like IE also Chrome) tend to display a
>"userfriendly" page without actually telling what the error is so it's
>hard 
>to help from technical aspect.
>
>The second thing you should check are the error logs.
>Usually there should be a reasonable (humanreadable) answer why a
>particular 
>request has failed.
>
>
>
>> Additionally, how can I confirm what version of Nginx I am using?  I
>>have 
>> it running on a linux server.
>
>/path/to/nginx v
>
>or -V  to see what compile time options were added
>
>
>rr 
>
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